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PACE

  • Using PACE
  • A worked example
  • Reference
  • GitHub
  • The R package
  • Using PACE
  • A worked example
  • Reference
  • GitHub
  • The R package

Index

_ | A | B | C | D | F | M | N | P | S | T | V

_

  • __init__() (pace.FitStatistics method)
    • (pace.PaceFit method)

A

  • ambient_field() (in module pace)
  • anchor_genes() (in module pace)

B

  • build_neighbourhood() (in module pace)

C

  • cell_contamination() (in module pace)
  • cell_types() (in module pace)
  • compact_fit() (in module pace)

D

  • driver_scores() (in module pace)

F

  • fit_state() (in module pace)
  • fit_statistics() (in module pace)
  • FitStatistics (class in pace)
  • fitted_means() (in module pace)

M

  • mash() (in module pace)

N

  • neighbour_slopes() (in module pace)

P

  • pace_decompose() (in module pace)
  • pace_drivers() (in module pace)
  • pace_fit() (in module pace)
  • pace_model() (in module pace)
  • pace_params() (in module pace)
  • pace_shrink() (in module pace)
  • PaceFit (class in pace)
  • pair_variance() (in module pace)
  • pair_variance_pratt() (in module pace)
  • plot_decomposition() (in module pace)
  • plot_drivers() (in module pace)
  • plot_pair_heatmap() (in module pace)
  • plot_proximity() (in module pace)
  • plot_shrinkage() (in module pace)

S

  • stash_pace() (in module pace)

T

  • top_drivers() (in module pace)

V

  • variance_decomposition() (in module pace)

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