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PACE

Using PACE
A worked example
Reference

GitHub
The R package

Using PACE
A worked example
Reference

GitHub
The R package

Section Navigation

pace.pace_fit
pace.pace_model
pace.pace_shrink
pace.pace_decompose
pace.pace_drivers

pace.neighbour_slopes
pace.variance_decomposition
pace.top_drivers
pace.pair_variance
pace.cell_contamination
pace.anchor_genes
pace.cell_types
pace.pace_params
pace.fit_state
pace.fit_statistics
pace.fitted_means

pace.plot_decomposition
pace.plot_pair_heatmap
pace.plot_drivers
pace.plot_proximity
pace.plot_shrinkage

pace.build_neighbourhood
pace.ambient_field
pace.stash_pace
pace.compact_fit

pace.PaceFit
pace.FitStatistics

pace.mash
pace.driver_scores
pace.pair_variance_pratt

Reference
pace.plot_shrinkage

pace.plot_shrinkage#

pace.plot_shrinkage(slopes, ax=None)[source]#: What the shrinkage did: the raw slope against the shrunken one.

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plot_shrinkage()

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