Per-pair driver composite

Reproduces the manuscript per-pair driver figure: the top genes ranked by their driver score for a focal-neighbour pair, alongside their per-gene single-frame variance decomposition. The score is carried in the driver_score column of topDrivers(object).

Usage

plotDrivers(
  object,
  focal,
  neighbour,
  n_top = 5,
  panels = c("both", "score", "gene")
)

Arguments

object

A PACEFit.

focal, neighbour

The focal and neighbour cell types.

n_top

Number of top genes to show.

panels

One of "both", "score", or "gene".

Value

A patchwork / ggplot object.

Examples

fit <- readRDS(system.file("extdata", "pace_fit_example.rds", package = "PACE"))
plotDrivers(fit, "Macrophage", "Tumour")