Per-focal variance decomposition plot

Reproduces the manuscript per-focal decomposition figure: a full stacked bar of the cell-type identity, spatial cell state, and contamination (spillover) components, with a zoomed grouped bar of the two small spatial components.

Usage

plotDecomposition(object, title = "Per-focal decomposition")

Arguments

object

A PACEFit.

title

Plot title.

Value

A patchwork / ggplot object.

Examples

fit <- readRDS(system.file("extdata", "pace_fit_example.rds", package = "PACE"))
plotDecomposition(fit)